BMRC Setup Guide

• Introduction
  • A preliminary note on CPU architecture
  • Who is who?
• Connecting to the Cluster
  • Connecting from within the Kennedy
  • Connecting from outside the Kennedy
  • Client ssh configuration
• Setting up your BASH environment
  • Configuration
  • Software modules
  • Using tmux
  • Staying under quota in your home directory
  • Log in messages
• Working with Python
  • Python version and module
  • Setting up a virtual environment
• Working with R
  • R module and version
  • R configuration
• Running CGAT pipelines
  • Configuration
  • Installing pipelines
  • Known Issues
• Working with Visual Studio Code
  • Installation
  • Running R scripts
  • Syncing settings between machines
• Help
  • Sources of information
  • Getting help

Indices and tables

• Index

• Module Index

• Search Page